ABSTRACT
The aim of this study was to determine the prevalence of virulence-associated genes and enterobacterial repetitive intergenic consensus PCR [ERIC-PCR] analysis of Campylobacter spp. isolated from children with diarrhea in Iran. A total of 200 stool specimens were obtained from children under 5 years during July 2012 to July 2013. Detection of C. jejuni and C. coli was performed by standard biochemical and molecular methods. The presence of virulence-associated genes and genetic diversity of isolates was examined using PCR and ERIC-PCR analyses. A total of 12 [6%] Campylobacter spp. were isolated from patients including 10 [4.5%] C. jejuni and 2 [1.5%] C.coli. The flaA, cadF and ciaB genes were present in 100% of isolates, while no plasmid of virB11 gene was present in their genome. The prevalence of invasion-associated marker was 100% among C. coli and was not detected in C. jejuni isolates. The distribution of both pldA and the genes associated with cytolethal distending toxin [CDT] was 58.3% in C. jejuni isolates. Seven distinct ERIC-PCR profiles were distinguished in three clusters using ERIC-PCR analysis. Genotyping analysis showed a relative correlation with geographic location of patients and virulence gene content of isolates. To our knowledge, this is the first molecular survey of Campylobacter spp. in Iran concerning genotyping and virulence gene content of both C. jejuni and C. coli. ERIC-PCR revealed appropriate discriminatory power for clustering C. jejuni isolates with identical virulence gene content. However, more studies are needed to clearly understand the pathogenesis properties of specific genotypes
ABSTRACT
The present study was aimed to investigate molecular diversity of Echinococcus gmnulosus isolates collected from human clinical samples using two mitochondrial genes cox1 and nod1 in Iran. Forty seven human hydatid cysts were collected through surgery from two hospitals in Tehran during 2010-2012. To determine the fertility of protoscoleces, the cyst fluids were subjected to morphological microscopic examinations. Protoscoleces were removed from each cyst and their total genomic DNAs were extracted. PCR was performed to amplify fragments of 450 and 400 base pair [bp] for cox1 and nod1 genes, respectively. Genotype diversity and sequence variation of the strains were studied by bioinformatics software and in comparison with those mtDNA sequences already dposited in GenBank. Sixteen, [53.3%], 13 [43.3%], and 1 [3.3%] samples were related to lung, liver, and spleen, respectively. The remained 17 unfertile samples were excluded from the study. From the 29 isolates, 86.7% [n=26] and 10% [n=3] were related to G1, and G3 genotypes, respectively. The sole isolate with G6 genotype was obtained from lung sample. Analysis of concatenated sequences of cox1+nad1 indicated the presence of 11 haplotypes among our strains that were related to genotypes G1 [n=9], G3 [n=1] and G6 [n=1]. In consistent to other reports from Iran, genotypes G1, G3, and G6 were observed in our human isolates. The rate of G3 genotype was however higher than other studies implying that human can be considered as a new appropriate host for G3 genotype. Further studies with more sample size from different geographic areas of Iran are needed for E. granulosus mapping
ABSTRACT
Laboratory tests are used to diagnose diseases, monitor its progress and response to treatment. So the goal of the laboratory medicine is reporting accurate and on time test results. The aim of this study was to evaluate rate and causes of post-analytical errors in the Clinical Laboratory of Children's Medical Center. We especially focused on 1] delay in reporting test results and 2] inaccuracy of test results. This descriptive study was conducted in Children's Medical Center in 2008. Any complaint related to accurate reporting and on time test results from inpatients and outpatients, physicians and wards during 3 months period were registered. The reasons were investigated then recorded in pre-designed forms; data were analyzed with SPSS version 15, Chi square and Fischer's tests. A total of 375 of 425 complaints were related to delay in reporting test results. We also recorded 50 cases of erroneous result complaints. Also 72% of delayed reports and 34% of complaints of unaccepted results were caused in post-analytical phase [i.e. after test was performed]. "Failure to input the results in computer" was the main reason [37%]. "Lost results "[25%] and transcription error [22.6%], "absence of laboratory request form" [9.8%] and "wrong method of filing" [4.2%] were the other observed causes. Microbiology, hematology and clinical chemistry were departments with the highest rate of complaints; whereas urine culture, CBC and biochemistry tests were the most frequent problematic tests. The rate of complaints was 1:108 patients or 1:541 tests, and 4.8% of results were not reported in timely manner. Our findings revealed that the source of most of the errors related to reporting test results were in post-analytical phases. Therefore along with continuing the educational programme, and improvement of automation, it seems necessary to add periodic evaluation and investigation of errors to benchmarks programmes, especially in reporting test result processes, in order to provide error free service to physician and their patients. Cooperation with the clinicians and the other personnel outside the laboratory is also important for error reduction